| lsdeluxe |
x86_64 |
1.1.2 |
2024-05-24 |
1.1.2* |
lsd |
ls, lsd |
utilities |
link |
|
| bat |
x86_64 |
0.24.0 |
2024-05-24 |
0.24.0* |
bat |
cat, bat |
utilities |
link |
|
| fd |
x86_64 |
10.1.0 |
2024-05-24 |
10.1.0* |
fd |
fd, find |
utilities |
link |
|
| bbmap |
x86_64 |
39.8 |
2024-05-24 |
39.6, 39.8* |
bbmap.sh, ... |
bbmap, bbduk, quality-control, QC, omics |
life sciences |
link |
link |
| blast |
x86_64 |
2.15.0 |
2024-05-24 |
2.15.0* |
blastn, ... |
blast, ncbi, alignment |
life sciences |
link |
link |
| bwa |
x86_64 |
0.7.18 |
2024-05-25 |
0.7.18* |
bwa, ... |
bwa, alignment, short-read, omics |
life sciences |
link |
link |
| minimap2 |
x86_64 |
2.28 |
2024-05-25 |
2.28* |
minimap2, ... |
minimap2, alignment, long read |
life sciences |
link, link |
link, link |
| diamond |
x86_64 |
2.1.9 |
2024-06-10 |
2.1.9* |
diamond |
diamond, blast, alignment |
life sciences |
link, link |
link |
| iqtree |
x86_64 |
2.3.4 |
2024-06-10 |
2.3.4* |
iqtree, ... |
iqtree, phylogenetics |
life sciences |
link, link |
link |
| ripgrep |
x86_64 |
14.1.0 |
2024-06-11 |
14.1.0* |
rg |
rg, ripgrep |
utilities |
link |
|
| vsearch |
x86_64 |
2.28.1 |
2024-06-12 |
2.28.1* |
vsearch |
vsearch, alignment |
life sciences |
link |
link |
| seqkit |
x86_64 |
2.8.2 |
2024-06-12 |
2.8.2* |
seqkit |
seqkit, conversion, utility |
life sciences |
link |
link, link |
| sina |
x86_64 |
1.7.2 |
2024-06-12 |
1.7.2* |
sina |
sina, alignment, 16S |
life sciences |
link, link |
link |
| tldr |
x86_64 |
3.2.0 |
2024-06-12 |
3.2.0* |
tldr |
tldr, manpage |
utilities |
link, link |
|
| fasttree |
x86_64 |
2.1.11 |
2024-06-12 |
2.1.11* |
fasttree, ... |
fasttree, phylogeny, phylogenetics |
life sciences |
link |
link, link |
| trimal |
x86_64 |
1.4.1 |
2024-06-12 |
1.4.1* |
readal, ... |
trimal, alignment, trimming |
life sciences |
link |
link |
| nf-core |
x86_64 |
2.14.1 |
2024-06-12 |
2.14.1* |
nf-core |
nf-core |
utilities |
link |
link |
| blobtools |
x86_64 |
1.1.1 |
2024-06-13 |
1.1.1* |
blobtools |
blobtools, QC, quality control |
life sciences |
link, link |
link, link |
| cafe |
x86_64 |
5.1.0 |
2024-06-18 |
5.1.0* |
cafe5 |
cafe, cafe5, phylogenetics |
life sciences |
link |
link |
| earlgrey |
x86_64 |
4.3.0 |
2024-06-18 |
4.3.0* |
earlGrey, ... |
earlgrey, earlGrey, repeats, transposable elements |
life sciences |
link |
link, link |
| htseq |
x86_64 |
2.0.5 |
2024-06-18 |
2.0.5* |
htseq-count, ... |
HTSeq, htseq, htseq-count, RNA-Seq |
life sciences |
link |
link |
| samtools |
x86_64 |
1.20 |
2024-06-18 |
1.20*, 1.3 |
samtools, ... |
samtools, bcftools, alignment |
life sciences |
link, link, link |
link |
| bedtools |
x86_64 |
2.31.1 |
2024-06-18 |
2.31.1* |
bedtools, ... |
bedtools, gff, annotation, features, omics |
life sciences |
link, link |
link |
| busco |
x86_64 |
5.7.1 |
2024-06-18 |
5.7.1* |
busco, ... |
BUSCO, genome quality control, QC |
life sciences |
link |
link |
| stringtie |
x86_64 |
2.2.3 |
2024-06-19 |
2.2.3* |
stringtie, ... |
stringtie, RNA-Seq, omics |
life sciences |
link, link |
link |
| trimmomatic |
x86_64 |
0.39 |
2024-06-19 |
0.39* |
trimmomatic |
trimmomatic, trimming, qc, omics |
life sciences |
link, link |
link |
| hmmer |
x86_64 |
3.4 |
2024-06-19 |
3.4* |
hmmscan, ... |
hmmer, hmm, motif finding |
life sciences |
link, link |
link |
| pybiolib |
x86_64 |
1.1.2184 |
2024-06-19 |
1.1.2184* |
biolib |
biolib |
utilities |
link |
|
| picard |
x86_64 |
3.1.1 |
2024-06-19 |
3.1.1* |
picard |
picard |
utilities |
link, link |
link |
| hyphy |
x86_64 |
2.5.62 |
2024-06-19 |
2.5.62* |
hyphy, ... |
hyphy, phylogenetics |
life sciences |
link, link |
|
| transdecoder |
x86_64 |
5.7.1 |
2024-06-19 |
5.7.1* |
TransDecoder.LongOrfs, ... |
transdecoder, RNA-Seq, omics |
life sciences |
link |
link |
| viennarna |
x86_64 |
2.6.4 |
2024-06-19 |
2.6.4* |
RNAfold, ... |
ViennaRNA, RNA, secondary structure, omics |
life sciences |
link |
link |
| trnascan-se |
x86_64 |
2.0.12 |
2024-06-24 |
2.0.12* |
EukHighConfidenceFilter, ... |
trnascan, trnascan-se, tRNA, annotation |
life sciences |
link, link |
link |
| barrnap |
x86_64 |
0.9 |
2024-06-24 |
0.9* |
barrnap |
barrnap, rRNA, annotation |
life sciences |
link |
|
| orthofinder |
x86_64 |
2.5.5 |
2024-06-24 |
2.5.5* |
orthofinder, ... |
orthofinder, omics, orthology, orthogroups, comparative genomics |
life sciences |
link |
link |
| rattler-build |
x86_64 |
0.18.0 |
2024-06-24 |
0.18.0* |
rattler-build, ... |
rattler-build, build |
utilities |
link, link |
|
| conda-recipe-manager |
x86_64 |
0.2.0 |
2024-06-24 |
0.2.0* |
conda-recipe-manager |
conda-recipe-manager, conda, build |
utilities |
link |
|
| spades |
x86_64 |
4.0.0 |
2024-06-24 |
4.0.0* |
spades.py, ... |
spades, assembly, omics |
life sciences |
link, link |
link, link |
| quast |
x86_64 |
5.2.0 |
2024-06-26 |
5.2.0* |
quast, ... |
quast, QC, quality-control, assembly, omics |
life sciences |
link, link |
link |
| GeneMark-ES |
x86_64 |
4.71 |
2024-06-26 |
4.71* |
gmes_petap.pl |
GeneMark-ES, gmes_petap.pl, annotation, omics |
life sciences |
link |
link |
| mrbayes |
x86_64 |
3.2.7 |
2024-06-26 |
3.2.7* |
mb, ... |
MrBayes, mrbayes, Bayesian stats, MCMC, phylogenetics |
life sciences |
link, link |
link |
| mafft |
x86_64 |
7.526 |
2024-06-26 |
7.526* |
mafft, ... |
mafft, alignment, msa |
life sciences |
link |
link |
| muscle |
x86_64 |
5.1 |
2024-06-26 |
5.1* |
muscle |
muscle, alignment, msa |
life sciences |
link, link, link |
link |
| orthomcl |
x86_64 |
2.0.9 |
2024-06-26 |
2.0.9* |
orthomclAdjustFasta, ... |
orthomcl, orthology, orthogroups, omics |
life sciences |
link |
link |
| pal2nal |
x86_64 |
14.1 |
2024-06-27 |
14.1* |
pal2nal.pl |
pal2nal, alignment, msa, conversion |
life sciences |
link |
link |
| ClonalFrameML |
x86_64 |
1.13 |
2024-06-27 |
1.13* |
ClonalFrameML |
ClonalFrame, ClonalFrameML, recombination, omics, phylogenetics |
life sciences |
link, link |
link |
| CheckM2 |
x86_64 |
1.0.2 |
2024-06-27 |
1.0.2* |
checkm2 |
CheckM, CheckM2, quality control, QC, omics |
life sciences |
link |
|
| CheckM |
x86_64 |
1.2.3 |
2024-06-27 |
1.2.3* |
checkm |
CheckM, quality control, QC, omics |
life sciences |
link, link |
link |
| qualimap |
x86_64 |
2.3 |
2024-06-27 |
2.3* |
qualimap |
qualimap, alignment, quality control, QC, omics |
life sciences |
link |
link |
| gffread |
x86_64 |
0.12.7 |
2024-06-27 |
0.12.7* |
gffread |
gffread, conversion tool, gff, omics |
utilities |
link, link |
link |
| alistat |
x86_64 |
1.15 |
2024-06-27 |
1.15* |
alistat |
alistat, phylogenomics, msa, QC, quality control |
life sciences |
link |
link |
| get_pangenes |
x86_64 |
20240627 |
2024-06-27 |
20240627* |
get_pangenes.pl, ... |
get_pangenes, comparative genomics, pangenomes |
life sciences |
link |
link, link |
| kallisto |
x86_64 |
0.50.1 |
2024-06-27 |
0.50.1* |
kallisto |
kallisto, RNA-Seq, transcriptomics |
life sciences |
link |
link |
| hisat2 |
x86_64 |
2.2.1 |
2024-06-27 |
2.2.1* |
extract_exons.py, ... |
hisat2, RNA-Seq, transcriptomics |
life sciences |
link |
link |
| vcftools |
x86_64 |
0.1.16 |
2024-06-27 |
0.1.16* |
fill-aa, ... |
vcftools, SNPs, annotation |
life sciences |
link, link |
link |
| gatk4 |
x86_64 |
4.5.0.0 |
2024-06-28 |
4.5.0.0* |
gatk |
gatk, SNPs, variant calling, variant analysis |
life sciences |
link, link |
link, link, link |
| STAR |
x86_64 |
2.7.11b0 |
2024-06-28 |
2.7.11b0* |
STAR, ... |
STAR, RNA-Seq, transcriptomics |
life sciences |
link, link, link |
link |
| cutadapt |
x86_64 |
4.9 |
2024-06-28 |
4.9* |
cutadapt |
cutadapt, QC, quality control, omics |
life sciences |
link, link |
link |
| flye |
x86_64 |
2.9.4 |
2024-06-28 |
2.9.4* |
flye, ... |
flye, assembly, long reads, omics |
life sciences |
link |
link, link |
| RAxML |
x86_64 |
8.2.13 |
2024-06-28 |
8.2.13* |
raxmlHPC, ... |
RAxML, phylogenetics |
life sciences |
link |
link |
| raxml-ng |
x86_64 |
1.2.2 |
2024-06-28 |
1.2.2* |
raxml-ng, ... |
raxml-ng, RAxML, phylogenetics |
life sciences |
link, link |
link |
| beast |
x86_64 |
1.10.4 |
2024-06-28 |
1.10.4* |
beast, ... |
BEAST, MCMC, Bayesian stats, phylogenetics |
life sciences |
link, link |
link |
| paml |
x86_64 |
4.10.7 |
2024-06-28 |
4.10.7* |
baseml, ... |
paml, evolution, phylogenetics |
life sciences |
link |
link |
| kofamscan |
x86_64 |
1.3.0 |
2024-06-28 |
1.3.0* |
kofam_scan |
kofamscan, annotation, KEGG, KO, KOFAM |
life sciences |
|
|
| isescan |
x86_64 |
1.7.2.3 |
2024-06-28 |
1.7.2.3* |
isescan.py |
isescan, insertion elements, mobile genetic elements, annotation |
life sciences |
link |
link |
| jq |
x86_64 |
1.7.1 |
2024-06-28 |
1.7.1* |
jq |
jq, json |
utilities |
link |
|
| yq |
x86_64 |
3.4.3 |
2024-06-28 |
3.4.3* |
yq, ... |
yq, yaml |
utilities |
link |
|
| ncbi-datasets |
x86_64 |
16.22.1 |
2024-07-05 |
16.22.1* |
datasets, ... |
ncbi-datasets, datasets, genome download |
utilities |
link, link, link |
|
| seqtk |
x86_64 |
1.4 |
2024-07-11 |
1.4* |
seqtk |
seqtk, utility, conversion |
life sciences |
link |
|
| fastq_utils |
x86_64 |
0.25.2 |
2024-07-11 |
0.25.2* |
fastq_info, ... |
fastq_utils, utility, FASTQ, QC |
life sciences |
link |
|
| fastqc |
x86_64 |
0.12.1 |
2024-07-11 |
0.12.1* |
fastqc |
fastqc, utility, QC |
life sciences |
link |
|
| nextflow |
x86_64 |
24.4.3 |
2024-07-11 |
24.4.3* |
nextflow |
nextflow, pipelines |
life sciences |
link |
|
| multiqc |
x86_64 |
1.23 |
2024-07-11 |
1.23* |
multiqc |
multiqc, QC, reports |
life sciences |
link |
link |
| R |
x86_64 |
4.3.3 |
2024-07-12 |
4.3.3 |
R, ... |
R, jupyter |
languages |
link |
|
| btop |
x86_64 |
1.3.2 |
2024-07-12 |
1.3.2* |
btop |
btop, top |
utilities |
link |
|
| eggnog-mapper |
x86_64 |
2.1.12 |
2024-07-16 |
2.1.12* |
emapper.py, ... |
eggnog-mapper, annotation, omics |
life sciences |
link |
link, link |
| metaphlan |
x86_64 |
4.1.1 |
2024-07-17 |
4.1.1* |
metaphlan, ... |
metaphlan, metagenomics |
life sciences |
link |
link |
| trinity |
x86_64 |
2.15.1 |
2024-07-23 |
2.15.1* |
Trinity |
Trinity, assembly, RNA-Seq |
life sciences |
link |
link |
| bioconvert |
x86_64 |
1.1.1 |
2024-07-23 |
1.1.1* |
bioconvert |
bioconvert, conversion tool |
utilities |
link |
|
| bakta |
x86_64 |
1.9.4 |
2024-07-23 |
1.9.4* |
bakta, ... |
bakta, annotation |
life sciences |
link |
link, link |
| humann |
x86_64 |
3.9 |
2024-07-26 |
3.9* |
humann, ... |
humann, metagenomics |
life sciences |
link |
link |
| kneaddata |
x86_64 |
0.12.0 |
2024-07-26 |
0.12.0* |
kneaddata, ... |
kneaddata, QC, metagenomics, host removal |
life sciences |
link, link |
|
| kraken2 |
x86_64 |
2.1.3 |
2024-07-26 |
2.1.3* |
kraken2, ... |
kraken2, metagenomics |
life sciences |
link, link |
link |
| qiime2 |
x86_64 |
2024.5 |
2024-08-06 |
2024.5* |
qiime |
qiime2, qiime, metagenomics, 16S |
life sciences |
link |
|
| EDTA |
x86_64 |
20240806 |
2024-08-06 |
20240806* |
EDTA.pl, ... |
EDTA, TE, omics, transposable elements, annotation |
life sciences |
link |
link, link, link |
| stacks |
x86_64 |
2.65 |
2024-08-08 |
2.65* |
denovo_map.pl, ... |
Stacks, RAD-seq, population genetics |
life sciences |
link |
link |
| structure |
x86_64 |
2.3.4 |
2024-08-08 |
2.3.4* |
structure |
Structure, population genetics |
life sciences |
link |
link, link |
| sra-tools |
x86_64 |
3.1.1 |
2024-08-15 |
3.1.1* |
sratools, ... |
sra-tools, NCBI |
utilities |
link |
|
| skani |
x86_64 |
0.2.2 |
2024-08-15 |
0.2.2* |
skani |
skani, ANI, average nucleotide identity |
life sciences |
link, link |
link |
| nanoplot |
x86_64 |
1.43.0 |
2024-08-16 |
1.43.0* |
NanoPlot |
nanoplot, long read, nanopore, QC |
life sciences |
link |
link |
| pilon |
x86_64 |
1.24 |
2024-08-16 |
1.24* |
pilon |
pilon, long read, nanopore, assembly |
life sciences |
link |
link |
| genomescope2 |
x86_64 |
2.0.1 |
2024-08-16 |
2.0.1* |
genomescope2 |
genomescope2, omics, QC |
life sciences |
link |
link |
| disperseNN2 |
x86_64 |
0.0.7 |
2024-08-16 |
0.0.7* |
disperseNN2 |
disperseNN2 |
life sciences |
link |
link |
| fineradstructure |
x86_64 |
0.3.2 |
2024-08-16 |
0.3.2* |
finestructure, ... |
fineRADstructure, RADpainter, population genetics, population structure |
life sciences |
link |
link |
| admixture |
x86_64 |
1.3.0 |
2024-08-16 |
1.3.0* |
admixture |
admixture, ancestral reconstruction, SNPs |
life sciences |
link |
link |
| faststructure |
x86_64 |
1.0 |
2024-08-16 |
1.0* |
structure.py, ... |
fastSTRUCTURE, population structure, population genetics, SNPs |
life sciences |
link |
link |
| bellerophon |
x86_64 |
1.0 |
2024-08-16 |
1.0* |
bellerophon |
bellerophon, assembly, scaffolding, Hi-C |
life sciences |
link, link |
|
| python-dotenv |
x86_64 |
1.0.1 |
2024-08-19 |
1.0.1* |
dotenv |
python-dotenv, configuration |
utilities |
link |
|
| direnv |
x86_64 |
2.34.0 |
2024-08-19 |
2.34.0* |
direnv |
direnv, configuration |
utilities |
link |
|
| gtdbtk |
x86_64 |
2.4.0 |
2024-08-20 |
2.4.0* |
gtdbtk |
gtdb, gtdbtk, omics, species classification |
life sciences |
link |
link, link |
| meme |
x86_64 |
5.5.6 |
2024-08-20 |
5.5.6* |
meme, ... |
meme, motif search, meme-suite |
life sciences |
link |
link, link |
| nodejs |
x86_64 |
22.6 |
2024-08-21 |
22.6 |
node, ... |
node, nodejs, npm |
languages |
link |
|
| sregistry |
x86_64 |
0.2.39 |
2024-08-27 |
0.2.39 |
sregistry |
sregistry, singularity |
utilities |
link |
|
| mummer4 |
x86_64 |
4.0.0 |
2024-08-27 |
4.0.0* |
mummer, ... |
Mummer, Mummer alignment tool |
life sciences |
link |
link |
| nextpolish |
x86_64 |
1.4.1 |
2024-08-27 |
1.4.1* |
nextPolish, ... |
nextpolish, QC, assembly |
life sciences |
link, link |
link |
| augustus |
x86_64 |
3.5.0 |
2024-08-29 |
3.5.0* |
augustus, ... |
augustus, annotation |
life sciences |
link |
link |
| wfmash |
x86_64 |
0.20.0 |
2024-08-30 |
0.20.0* |
wfmash, ... |
wfmash, alignment, omics, whole genome alignment |
life sciences |
link |
link, link, link |
| rsem |
x86_64 |
1.3.3 |
2024-08-30 |
1.3.3* |
convert-sam-for-rsem, ... |
RSEM, RNA-Seq, quantification of gene and isoform expression |
life sciences |
link |
link |
| ribodetector |
x86_64 |
0.3.1 |
2024-08-30 |
0.3.1* |
ribodetector, ... |
RiboDetector, rRNA |
life sciences |
link |
link |
| smudgeplot |
x86_64 |
0.2.5 |
2024-08-30 |
0.2.5* |
smudgeplot.py, ... |
smudgeplot, Inference of ploidy and heterozygosity structure using whole genome sequencing data |
life sciences |
link |
link |
| interproscan |
x86_64 |
5.69 |
2024-08-30 |
5.59, 5.69* |
interproscan.sh |
InterProScan, Genome-scale protein function classification, gene annotation |
life sciences |
link |
link |
| repeatmasker |
x86_64 |
4.1.5 |
2024-08-30 |
4.1.5* |
RepeatMasker, ... |
RepeatMasker, screens DNA sequences for interspersed repeats and low complexity DNA sequences, repetitive elements |
life sciences |
link |
link |
| repeatmodeler |
x86_64 |
2.0.5 |
2024-08-30 |
2.0.5* |
RepeatModeler, ... |
RepeatModeler, de-novo repeat family identification and modeling, repetitive elements |
life sciences |
link |
link |
| sourmash |
x86_64 |
4.8.11 |
2024-09-03 |
4.8.11* |
sourmash |
sourmash, Quickly search, compare, and analyze genomic and metagenomic data sets |
life sciences |
link |
link |
| canu |
x86_64 |
2.2 |
2024-09-04 |
2.2* |
canu, ... |
canu, assembly, long-read, omics |
life sciences |
link, link |
link, link |
| poplddecay |
x86_64 |
3.43 |
2024-09-06 |
3.43* |
PopLDdecay, ... |
PopLDDecay, population genomics, SNPs |
life sciences |
link |
link |
| fragpipe |
x86_64 |
20.0 |
2024-09-06 |
20.0* |
fragpipe, ... |
FragPipe, comprehensive analysis of shotgun proteomics data |
life sciences |
link |
link |
| plink |
x86_64 |
20240818 |
2024-09-06 |
20240818* |
plink |
plink, population genomics, SNPs, GWAS |
life sciences |
link, link |
link |
| plink2 |
x86_64 |
20240820 |
2024-09-06 |
20240820* |
plink2 |
plink2, population genomics, SNPs, GWAS |
life sciences |
link, link |
link |
| fastsimcoal |
x86_64 |
2.8 |
2024-09-06 |
2.8* |
fsc28 |
fastsimcoal, population genomics, evolution, recombination |
life sciences |
link, link |
link |
| angsd |
x86_64 |
0.940 |
2024-09-06 |
0.940* |
angsd, ... |
ANGSD, population genetics, omics |
life sciences |
link, link |
link |
| antismash |
x86_64 |
7.1.0 |
2024-09-10 |
7.1.0* |
antismash |
antiSMASH, antibiotics and Secondary Metabolite Analysis SHell |
life sciences |
link |
link |
| fastp |
x86_64 |
0.23.4 |
2024-09-10 |
0.23.4* |
fastp |
fastp, ultra-fast FASTQ preprocessor QC adapters trimming filtering splitting |
life sciences |
link |
link |
| dsuite |
x86_64 |
0.5 |
2024-09-13 |
0.5* |
Dsuite, ... |
Dsuite, population genetics, admixutre, ABBA-BABA, omics |
life sciences |
link, link |
link, link |
| aria2 |
x86_64 |
1.37.0 |
2024-09-13 |
1.37.0*, 1.37.0* |
aria2c |
aria2, download-manager, tool |
utilities |
link |
link |
| snpeff |
x86_64 |
5.2 |
2024-09-16 |
5.2* |
snpEff |
SnpEff, Genetic variant annotation and effect prediction toolbox |
life sciences |
link |
link |
| get_homologues |
x86_64 |
3.7.1 |
2024-09-18 |
3.7.1* |
get_homologues.pl, ... |
GET_HOMOLOGUES, pan-genome analysis |
life sciences |
link |
link |
| spaln |
x86_64 |
3.0.6 |
2024-09-23 |
3.0.6* |
spaln, ... |
spaln, Genome mapping and spliced alignment of cDNA or amino acid sequences |
life sciences |
link |
link |
| julia |
x86_64 |
1.10.5 |
2024-09-24 |
1.10.5* |
julia |
julia |
languages |
link |
|
| ncdu |
x86_64 |
2.5 |
2024-09-24 |
2.5* |
ncdu |
ncdu |
utilities |
link |
|
| syri |
x86_64 |
1.7.0 |
2024-10-01 |
1.7.0* |
syri, ... |
SyRI, Synteny and rearrangement identifier between whole-genome assemblies |
life sciences |
link |
link |
| plotsr |
x86_64 |
1.1.1 |
2024-10-01 |
1.1.1* |
plotsr |
plotsr, plot synteny and structural rearrangements between genomes |
life sciences |
link |
link |
| idemuxcpp |
x86_64 |
0.3.0 |
2024-10-02 |
0.3.0* |
idemuxCPP |
idemuxCPP, demultiplex paired-end fastq files from QuantSeq-Pool |
life sciences |
link |
link |
| pyani |
x86_64 |
0.2.13.1 |
2024-10-07 |
0.2.13.1* |
pyani, ... |
pyani, ANI, omics |
life sciences |
link |
link |
| maker |
x86_64 |
2.31.9 |
2024-10-07 |
2.31.9* |
maker, ... |
maker, annotation, omics |
life sciences |
link |
link |
| getorganelle |
x86_64 |
1.7.7.1 |
2024-10-07 |
1.7.7.1* |
get_organelle_from_reads.py, ... |
GetOrganelle, assembly, eukaryotes, mitochondria |
life sciences |
link |
link |
| oatk |
x86_64 |
1.0 |
2024-10-08 |
1.0* |
oatk, ... |
Oatk, de novo assembly of complex plant organelle genomes using PacBio HiFi data |
life sciences |
link |
link |
| ragtag |
x86_64 |
2.1.0 |
2024-10-08 |
2.1.0* |
ragtag.py, ... |
RagTag, Tools for fast and flexible genome assembly scaffolding and improvement |
life sciences |
link |
link |
| snakemake |
x86_64 |
8.20.6 |
2024-10-09 |
8.20.6 |
snakemake |
snakemake, pipeline, python |
utilities |
link |
link |
| blat |
x86_64 |
469 |
2024-10-14 |
469* |
blat, ... |
blat, ucsc-blat, alignment |
life sciences |
link, link |
link |
| dos2unix |
x86_64 |
7.4.0 |
2024-10-14 |
7.4.0 |
dos2unix, ... |
dos2unix |
utilities |
link |
|
| pear |
x86_64 |
0.9.6 |
2024-10-14 |
0.9.6* |
pear, ... |
pear, read merger, omics |
life sciences |
link |
|
| phyluce |
x86_64 |
1.7.3 |
2024-10-15 |
1.7.3* |
phyluce_workflow, ... |
phyluce, illumiprocessor, QC, phylogenomics |
life sciences |
link |
link |
| samblaster |
x86_64 |
0.1.26 |
2024-10-16 |
0.1.26* |
samblaster |
samblaster, tool to mark duplicates and extract discordant and split reads from sam files |
life sciences |
link |
link |
| mifish |
x86_64 |
2.0.0 |
2024-10-17 |
2.0.0* |
mifish |
mifish, metabarcoding |
life sciences |
link |
link |
| nvitop |
x86_64 |
1.3.2 |
2024-10-17 |
1.3.2 |
nvitop |
nvitop, monitoring |
utilities |
link |
|
| idemux |
x86_64 |
0.1.6 |
2024-10-18 |
0.1.6* |
idemux |
idemux, demultiplex paired-end fastq files from QuantSeq Pool |
life sciences |
link |
link |
| glimmer |
x86_64 |
3.2 |
2024-10-22 |
3.2* |
glimmer3, ... |
glimmer, annotation |
life sciences |
link |
link |